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AnVIL Demo: Epigenetics in AnVIL on September 21, 2023
by Natalie Kucher 14 Sep '23

14 Sep '23

Join our next AnVIL Demo! [A blue and white logo Description automatically generated] Epigenetics in AnVIL September 21, 2023 at 11:00 AM ET (your time zone<https://www.timeanddate.com/worldclock/fixedtime.html?msg=September+AnVIL+D…>) on Zoom 11:00 AM - 11:30 AM ET – Demo on AnVIL In this demo, we'll introduce fundamentals of epigenetic data analysis and show how you can use RStudio to look at Chip-seq experiment results on AnVIL. We'll also briefly touch on other resources for doing epigenetics research on AnVIL. 11:30 AM - 12:00 PM ET – Q&A We’ll open up the floor to questions about the demo presented, and will have AnVIL and Terra support on call to answer any questions about AnVIL you might have! ✏️ Sign up: <https://urldefense.com/v3/__https:/forms.gle/7CcaLE9AM7FrYqpP7__;!!GuAItXPz…> https://forms.gle/7CcaLE9AM7FrYqpP7 What are AnVIL Demos? AnVIL Demos are a monthly, virtual meeting where we highlight what you can do on the NHGRI<https://www.genome.gov/> Analysis, Visualization, and Informatics Lab-space (AnVIL<https://anvilproject.org/>), a cloud-based computing platform for genomic data science! AnVIL Demos will start out with a 30-minute demonstration on the platform followed by open time for Q&A and user support. The demos will highlight a range of topics, from a capability of the platform to a scientific analysis powered by AnVIL. If you’re interested in showcasing how you use AnVIL at a future AnVIL Demos session, reach out to Natalie Kucher (nkucher3(a)jhu.edu<mailto:nkucher3@jhu.edu>). After the demo, we’ll open up the floor to answer questions about the demo and to answer any general questions you might have about AnVIL. Watch our past Demos from our YouTube playlist<https://www.youtube.com/playlist?list=PL6aYJ_0zJ4uC978C57P3TgAAfB38uy58E>! Future Demos September 21, 2023 – Epigenetics in AnVIL October 26, 2023 – DUOS - A tour of the AnVIL's innovative data sharing platform, and how it can help your research November 16, 2023 – Machine Learning with Bioconductor December 14, 2023 – Collecting and subsetting SRA data ✏️ Sign up for more demos: <https://urldefense.com/v3/__https:/forms.gle/7CcaLE9AM7FrYqpP7__;!!GuAItXPz…> https://forms.gle/7CcaLE9AM7FrYqpP7 Resources * AnVIL Getting Started Guide. An opinionated guide on how to get set up and start your work on AnVIL. Get started here<https://jhudatascience.org/AnVIL_Book_Getting_Started/>. * AnVIL YouTube Channel. Learn about AnVIL capabilities and features with our “AnVIL in 2 minutes” videos. Watch AnVIL in 2 minutes here<https://www.youtube.com/playlist?list=PL6aYJ_0zJ4uCABkMngSYjPo_3c-nUUmio> or watch past AnVIL Demos here<https://www.youtube.com/playlist?list=PL6aYJ_0zJ4uC978C57P3TgAAfB38uy58E>. * AnVIL Support Forum. Join the conversation at help.anvilproject.org<http://help.anvilproject.org/>. Upcoming Events Sign up to hear about future AnVIL Demos and announcements at lists.anvilproject.org<https://lists.anvilproject.org/lists/anvil-mailing-list.lists.anvilproject.…> and learn about upcoming events at https://anvilproject.org/events! Best, Natalie -- Natalie Kucher | Project Manager Johns Hopkins University Department of Biology Krieger School of Arts & Sciences nkucher3(a)jhu.edu<mailto:nkucher3@jhu.edu> https://anvilproject.org/

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AnVIL Demos: Learn how to use data across multiple AnVIL workspaces on June 22
by Natalie Kucher 08 Jun '23

08 Jun '23

Upcoming AnVIL Demos ✏️ Sign up: https://forms.gle/7CcaLE9AM7FrYqpP7 What are AnVIL Demos? AnVIL Demos are a monthly, virtual meeting where we highlight what you can do on the NHGRI<https://www.genome.gov/> Analysis, Visualization, and Informatics Lab-space (AnVIL<https://anvilproject.org/>), a cloud-based computing platform for genomic data science! AnVIL Demos will start out with a 30-minute demonstration on the platform followed by open time for Q&A and user support. The demos will highlight a range of topics, from a capability of the platform to a scientific analysis powered by AnVIL. If you’re interested in showcasing how you use AnVIL at a future AnVIL Demos session, reach out to Natalie Kucher (nkucher3(a)jhu.edu<mailto:nkucher3@jhu.edu>). After the demo, we’ll open up the floor to answer questions about the demo and to answer any general questions you might have about AnVIL. Watch our past Demos from our YouTube playlist<https://www.youtube.com/playlist?list=PL6aYJ_0zJ4uC978C57P3TgAAfB38uy58E>! June Demo: How to use data across multiple AnVIL workspaces When: June 22, 2023 at 11:00 AM ET (your time zone<https://www.timeanddate.com/worldclock/fixedtime.html?msg=AnVIL+Demos&iso=2…>) on Zoom<https://zoom.us/j/98431880835?pwd=ZDVSMGcyak54dnZKNUE1Tm50WE4vUT09> 11:00 AM - 11:30 AM ET – Demo on AnVIL In this demo, Frederick Tan will highlight a key benefit of using a cloud-based platform for data storage and compute: you can access and analyze the data right in the cloud, without having to move it around or download it! He will demonstrate how to bring together data that are stored in different workspaces to analyze them together. 11:30 AM - 12:00 PM ET – Q&A We’ll open up the floor to questions about the demo presented, and will have AnVIL and Terra support on call to answer any questions about AnVIL you might have! ✏️ Sign up for more demos: https://forms.gle/7CcaLE9AM7FrYqpP7<https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefens…> Future Demos July 20, 2023 – Interactive Genomic Data Science with Bioconductor August 24, 2023 – Galaxy on AnVIL September 21, 2023 – Epigenetics in AnVIL Resources * AnVIL Getting Started Guide. An opinionated guide on how to get set up and start your work on AnVIL. Get started here<https://jhudatascience.org/AnVIL_Book_Getting_Started/>. * AnVIL YouTube Channel. Learn about AnVIL capabilities and features with our “AnVIL in 2 minutes” videos. Watch AnVIL in 2 minutes here<https://www.youtube.com/playlist?list=PL6aYJ_0zJ4uCABkMngSYjPo_3c-nUUmio>. * AnVIL Support Forum. Join the conversation at help.anvilproject.org<http://help.anvilproject.org>. Upcoming Events Sign up to hear about future AnVIL Demos and announcements at lists.anvilproject.org<https://lists.anvilproject.org/lists/anvil-mailing-list.lists.anvilproject.…> and learn about upcoming events at https://anvilproject.org/events! Best, Natalie -- Natalie Kucher | Project Manager Johns Hopkins University Department of Biology Krieger School of Arts & Sciences nkucher3(a)jhu.edu<mailto:nkucher3@jhu.edu> https://anvilproject.org/

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AnVIL Demos: Learn about WARP Pipelines in AnVIL on May 18
by Natalie Kucher 15 May '23

15 May '23

Upcoming AnVIL Demos! ✏️ Sign up: https://forms.gle/7CcaLE9AM7FrYqpP7 What are AnVIL Demos? AnVIL Demos are a monthly, virtual meeting where we highlight what you can do on the NHGRI<https://www.genome.gov/> Analysis, Visualization, and Informatics Lab-space (AnVIL<https://anvilproject.org/>), a cloud-based computing platform for genomic data science. AnVIL Demos will start out with a 30-minute demonstration on the platform followed by open time for Q&A and user support. The demos will highlight a range of topics, from a capability of the platform to a scientific analysis powered by AnVIL. If you’re interested in showcasing how you use AnVIL at a future AnVIL Demos session, reach out to Natalie Kucher (nkucher3(a)jhu.edu<mailto:nkucher3@jhu.edu>). After the demo, we’ll open up the floor to answer questions about the demo and to answer any general questions you might have about AnVIL. May Demo: WARP Pipelines in AnVIL/Terra When: May 18, 2023 at 11:00 AM ET (your time zone<https://www.timeanddate.com/worldclock/fixedtime.html?msg=AnVIL+Demos&year=…>) on Zoom<https://zoom.us/j/98431880835?pwd=ZDVSMGcyak54dnZKNUE1Tm50WE4vUT09> 11:00 AM - 11:30 AM ET – Demo on AnVIL Our partners from the Broad User Education and Pipeline Development teams will share: * An overview of the WDL Analysis Research Pipelines (WARP), a GitHub repository for cloud-based WDL workflows * How the WARP team develops, tests, and shares workflows in Dockstore and AnVIL/Terra * Where to find public WARP workspaces in AnVIL/Terra so you can try them at low cost 11:30 AM - 12:00 PM ET – Q&A We’ll open up the floor to questions about the demo presented, and will have AnVIL and Terra support on call to answer any questions about AnVIL you might have! ✏️ Sign up for more demos: https://forms.gle/7CcaLE9AM7FrYqpP7<https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefens…> Upcoming Demos May 18, 2023 – WARP Pipelines in AnVIL/Terra June 22, 2023 – How to use data across multiple AnVIL workspaces July 20, 2023 – Interactive Genomic Data Science with Bioconductor August 24, 2023 – Galaxy on AnVIL September 21, 2023 – Epigenetics in AnVIL Resources * AnVIL Getting Started Guide. An opinionated guide on how to get set up and start your work on AnVIL. Get started here<https://jhudatascience.org/AnVIL_Book_Getting_Started/>. * AnVIL YouTube Channel. Learn about AnVIL capabilities and features with our “AnVIL in 2 minutes” videos. Watch AnVIL in 2 minutes here<https://www.youtube.com/playlist?list=PL6aYJ_0zJ4uCABkMngSYjPo_3c-nUUmio>. * AnVIL Support Forum. Join the conversation at help.anvilproject.org<http://help.anvilproject.org>. * Join our mailing list. Sign up to hear about future AnVIL Demos and announcements at lists.anvilproject.org<https://lists.anvilproject.org/lists/anvil-mailing-list.lists.anvilproject.…>. Upcoming Events Learn about the upcoming AnVIL events at https://anvilproject.org/events! Best, Natalie -- Natalie Kucher | Project Manager Johns Hopkins University Department of Biology Krieger School of Arts & Sciences nkucher3(a)jhu.edu<mailto:nkucher3@jhu.edu> https://anvilproject.org/

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AnVIL Demos: Human Pangenome Analysis on April 27, 2023
by Natalie Kucher 21 Apr '23

21 Apr '23

Tune in to our next AnVIL Demo! ✏️ Sign up: https://forms.gle/7CcaLE9AM7FrYqpP7 What are AnVIL Demos? Join us to see a highlight of what you can do on the NHGRI<https://www.genome.gov/> Analysis, Visualization, and Informatics Lab-space (AnVIL<https://anvilproject.org/>), a cloud-based computing platform for genomic data science. AnVIL Demos will start out with a 30-minute demonstration on the platform followed by open time for Q&A and user support. The demos will highlight a range of topics, from a capability of the platform to a scientific analysis powered by AnVIL. If you’re interested in showcasing how you use AnVIL at a future AnVIL Demos session, reach out to Natalie Kucher (nkucher3(a)jhu.edu<mailto:nkucher3@jhu.edu>). After the demo, we’ll open up the floor to answer questions about the demo and to answer any general questions you might have about AnVIL. April Demo: Using the Human Pangenome on AnVIL When: April 27, 2023 at 11:00 AM ET (your time zone<https://www.timeanddate.com/worldclock/fixedtime.html?msg=AnVIL+Demos&iso=2…>) on Zoom<https://zoom.us/j/98431880835?pwd=ZDVSMGcyak54dnZKNUE1Tm50WE4vUT09> 11:00 AM - 11:30 AM ET – Demo on AnVIL Julian Lucas from the Human Pangenome Reference Consortium (HPRC) will present about the consortium and lead the demo, covering the following: * Introduction to the Human Pangenome Reference Consortium * Describe how HPRC uses AnVIL * Demonstrate copying a workspace and launching a workflow * Demonstrate how to launch a notebook 11:30 AM - 12:00 PM ET – Q&A Ask your questions about the demo presented. AnVIL and Terra support will be on the call to answer any questions about AnVIL you might have! ✏️ Sign up for more demos: https://forms.gle/7CcaLE9AM7FrYqpP7<https://nam02.safelinks.protection.outlook.com/?url=https%3A%2F%2Furldefens…> Upcoming Demos May 18, 2023 – WARP Pipelines in AnVIL/Terra June 22, 2023 – How to use data across multiple AnVIL workspaces July 20, 2023 – Bioconductor in AnVIL Resources * AnVIL Getting Started Guide. An opinionated guide on how to get set up and start your work on AnVIL. Get started here<https://jhudatascience.org/AnVIL_Book_Getting_Started/>. * AnVIL YouTube Channel. Learn about AnVIL capabilities and features with our “AnVIL in 2 minutes” videos. Watch AnVIL in 2 minutes here<https://www.youtube.com/playlist?list=PL6aYJ_0zJ4uCABkMngSYjPo_3c-nUUmio>. * AnVIL Support Forum. Join the conversation at help.anvilproject.org<http://help.anvilproject.org>. * Join our mailing list. Sign up to hear about future AnVIL Demos and announcements at lists.anvilproject.org<https://lists.anvilproject.org/lists/anvil-mailing-list.lists.anvilproject.…>. Upcoming Events Learn about the upcoming AnVIL events at https://anvilproject.org/events!

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*NEW* Introducing AnVIL Demos! on March 23 at 11 AM EDT
by Natalie Kucher 16 Mar '23

16 Mar '23

[cid:image002.png@01D95823.05917A20] Introducing AnVIL Demos! ✏️ Sign up here: https://forms.gle/7CcaLE9AM7FrYqpP7 What are AnVIL Demos? Join us to see a highlight of what you can do on AnVIL! AnVIL Demos will start out with a 30-minute demonstration on the platform followed by open time for Q&A and user support. The demos will highlight a range of topics, from a capability of the platform to a scientific analysis powered by AnVIL. If you’re interested in showcasing how you use AnVIL at a future AnVIL Demos session, reach out to Natalie Kucher (nkucher3(a)jhu.edu<mailto:nkucher3@jhu.edu>). After the demo, we’ll open up the floor to answer questions about the demo and to answer any general questions you might have about AnVIL. March Demo: Introduction to AnVIL When: March 23, 2023 at 11:00 AM ET (your time zone<https://www.timeanddate.com/worldclock/fixedtime.html?msg=AnVIL+Demos&iso=2…>) on Zoom 11:00 AM - 11:30 AM ET – Demo on AnVIL Stephen Mosher will kick off our first AnVIL Demo, showing off how to get started on AnVIL and take a tour of the major platform components. 11:30 AM - 12:00 PM ET – Q&A We’ll open up the floor to questions about the demo presented, and will have AnVIL and Terra support on call to answer any questions about AnVIL you might have! ✏️ Sign up: https://forms.gle/7CcaLE9AM7FrYqpP7 Upcoming Demos April 27, 2023 – Using the Human Pangenome on AnVIL May 18, 2023 – WARP Pipelines in AnVIL/Terra June 22, 2023 – How to use data across multiple AnVIL workspaces Resources * AnVIL Getting Started Guide. An opinionated guide on how to get set up and start your work on AnVIL. Get started here<https://jhudatascience.org/AnVIL_Book_Getting_Started/>. * AnVIL YouTube Channel. Learn about AnVIL capabilities and features with our “AnVIL in 2 minutes” videos. Watch AnVIL in 2 minutes here<https://www.youtube.com/playlist?list=PL6aYJ_0zJ4uCABkMngSYjPo_3c-nUUmio>. * AnVIL Support Forum. Join the conversation at help.anvilproject.org<http://help.anvilproject.org>. Upcoming Events Learn about the upcoming AnVIL events at https://anvilproject.org/events!

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AnVIL Office Hours - February 23, 2023
by Natalie Kucher 10 Feb '23

10 Feb '23

Dear all, The AnVIL Outreach Working Group is hosting virtual AnVIL Office Hours on Thursday, February 23, 2023 at 11:00 AM ET. At Office Hours, you can ask your questions about working on AnVIL and get them answered live – whether you’re trying to set up a billing account, launch Galaxy or RStudio, looking for methods and featured workspaces, and more. AnVIL team members will be available to help you get unstuck, troubleshoot issues, and discover online resources that can help you further. Register here to receive the meeting link (https://forms.gle/8CkB1dtmAwUPNyn17) and please share your questions on Discourse (https://help.anvilproject.org/t/anvil-office-hours-23feb2023-11-am-et/147) ahead of the session. Thanks! Natalie -- Natalie Kucher | Project Manager Johns Hopkins University Department of Biology Krieger School of Arts & Sciences nkucher3(a)jhu.edu<mailto:nkucher3@jhu.edu> https://anvilproject.org/

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AnVIL Office Hours - 26JAN2023 at 11 AM ET
by Natalie Kucher 23 Jan '23

23 Jan '23

Dear all, The AnVIL Outreach Working Group is hosting virtual AnVIL Office Hours on Thursday, January 26, 2023 at 11:00 AM ET. Ask your questions about working on AnVIL and get them answered in person – whether you’re trying to set up a billing account, launch Galaxy or RStudio, looking for methods and featured workspaces, and more. AnVIL team members will be available to help you get unstuck, troubleshoot issues, and discover online resources that can help you further. Register here to receive the meeting link (https://forms.gle/yYgdU5M6zKVk4zeK8) and please share your questions on Discourse (https://help.anvilproject.org/t/anvil-office-hours-26jan2023-11-am-et/146) ahead of the session. Thanks! Natalie -- Natalie Kucher | Project Manager Johns Hopkins University Department of Biology Krieger School of Arts & Sciences nkucher3(a)jhu.edu<mailto:nkucher3@jhu.edu> https://anvilproject.org/

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December AnVIL Office Hours - 15DEC2022 at 11 AM ET
by Natalie Kucher 09 Dec '22

09 Dec '22

Dear all, The AnVIL Outreach Working Group is hosting virtual AnVIL Office Hours on Thursday, December 15, 2022 at 11:00 AM ET. These Office Hours are an opportunity for you to get your questions about working on AnVIL answered in person – whether you’re trying to set up a billing account, launch Galaxy or RStudio, looking for methods and featured workspaces, and more. Members of the AnVIL team will be available to help you get unstuck, troubleshoot issues, and discover online resources that can help you further. Register here to receive the meeting link (https://forms.gle/dNnBayBF4DdJZUGw8) and please share your questions on Discourse (https://help.anvilproject.org/t/anvil-office-hours-15dec2022-11-am-et/142) ahead of the session. Best, Natalie -- Natalie Kucher | Project Manager Johns Hopkins University Department of Biology Krieger School of Arts & Sciences nkucher3(a)jhu.edu<mailto:nkucher3@jhu.edu> https://anvilproject.org/

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Reminder: September AnVIL Office Hours - 22SEP2022 at 11 AM ET
by Natalie Kucher 21 Sep '22

21 Sep '22

Dear all, This is a reminder that the next AnVIL Office Hours will be held tomorrow, Thursday September 22 at 11 AM ET. Please register here in advance: https://forms.gle/xABZ5vtrJc844iN66. Best, Natalie -- Natalie Kucher | Project Manager Johns Hopkins University Department of Biology Krieger School of Arts & Sciences nkucher3(a)jhu.edu<mailto:nkucher3@jhu.edu> https://anvilproject.org/ From: Natalie Kucher <nkucher3(a)jhu.edu> Date: Friday, September 2, 2022 at 10:35 AM To: Natalie Kucher <nkucher3(a)jhu.edu> Subject: September AnVIL Office Hours - 22SEP2022 at 11 AM ET Dear all, The AnVIL Outreach Working Group is hosting virtual AnVIL Office Hours on Thursday, September 22, 2021 at 11:00 AM ET. These Office Hours are a new opportunity for you to get your questions about working on AnVIL answered in person – whether you’re trying to set up a billing account, launch Galaxy or RStudio, looking for methods and featured workspaces, and more. Members of the AnVIL team will be available to help users including PIs, analysts, and data submitters get unstuck, troubleshoot issues, and discover online resources that provide further information. Register here to receive the meeting link (https://forms.gle/xABZ5vtrJc844iN66) and please share your questions on Discourse (https://help.anvilproject.org/t/anvil-office-hours-22sep2022-11-am-et/136) ahead of the session. Best, Natalie -- Natalie Kucher | Project Manager Johns Hopkins University Department of Biology Krieger School of Arts & Sciences nkucher3(a)jhu.edu<mailto:nkucher3@jhu.edu> https://anvilproject.org/

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